Functions
	pub_search ($search_array, $offset, $limit, &$total_records)

	chado_does_pub_exist ($pub_details)

	tripal_pub_get_remote_search_results ($remote_db, $search_array, $num_to_retrieve, $page=0)

	tripal_pub_get_raw_data ($dbxref)

	tripal_pub_update_publications ($do_contact=FALSE, $dbxref=NULL, $db=NULL)

	tripal_pub_import_publications_by_import_id ($import_id, $job_id=NULL)

	tripal_pub_import_publications ($report_email=FALSE, $do_update=FALSE)

	tripal_pub_import_by_dbxref ($pub_dbxref, $do_contact=FALSE, $do_update)

	tripal_pub_add_pub_dbxref ($pub_id, $pub_dbxref)

	tripal_pub_get_pubs_by_dbxref ($pub_dbxref)

	tripal_pub_get_pubs_by_title_type_pyear_series ($title, $type=NULL, $pyear=NULL, $series_name=NULL)

	tripal_pub_get_pub_by_uniquename ($uniquenname)

	tripal_pub_get_property ($pub_id, $property)

	tripal_pub_insert_property ($pub_id, $property, $value, $update_if_present=0)

	tripal_pub_update_property ($pub_id, $property, $value, $insert_if_missing=0)

	tripal_pub_delete_property ($pub_id, $property)

Detailed Description

Wrapper functions to provide backwards compatibility for the tripal analysis api

Function Documentation

◆ chado_does_pub_exist()

chado_does_pub_exist ( $pub_details )

Deprecated:: Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by tripal_publication_exists().

See also: tripal_publication_exists().

◆ pub_search()

pub_search	(		$search_array,
			$offset,
			$limit,
		&	$total_records
	)

Deprecated:: Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by tripal_search_publications().

See also: tripal_search_publications().

◆ tripal_pub_add_pub_dbxref()

tripal_pub_add_pub_dbxref	(	$pub_id,
		$pub_dbxref
	)

Deprecated:: Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by tripal_associate_dbxref().

See also: tripal_associate_dbxref().

◆ tripal_pub_delete_property()

tripal_pub_delete_property	(	$pub_id,
		$property
	)

Deprecated:: Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_delete_property().

See also: chado_delete_property().

◆ tripal_pub_get_property()

tripal_pub_get_property	(	$pub_id,
		$property
	)

Deprecated:: Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_get_property().

See also: chado_get_property().

◆ tripal_pub_get_pub_by_uniquename()

tripal_pub_get_pub_by_uniquename ( $uniquenname )

Deprecated:: Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_get_publication().

See also: chado_get_publication().

◆ tripal_pub_get_pubs_by_dbxref()

tripal_pub_get_pubs_by_dbxref ( $pub_dbxref )

Deprecated:: Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_get_publication().

See also: chado_get_publication().

◆ tripal_pub_get_pubs_by_title_type_pyear_series()

tripal_pub_get_pubs_by_title_type_pyear_series	(	$title,
		$type = `NULL`,
		$pyear = `NULL`,
		$series_name = `NULL`
	)

Deprecated:: Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_get_publication().

See also: chado_get_publication().

◆ tripal_pub_get_raw_data()

tripal_pub_get_raw_data ( $dbxref )

Deprecated:: Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_get_remote_pub_record().

See also: chado_get_remote_pub_record().

◆ tripal_pub_get_remote_search_results()

tripal_pub_get_remote_search_results	(	$remote_db,
		$search_array,
		$num_to_retrieve,
		$page = `0`
	)

Deprecated:: Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by tripal_get_remote_pubs().

See also: tripal_get_remote_pubs().

◆ tripal_pub_import_by_dbxref()

tripal_pub_import_by_dbxref	(	$pub_dbxref,
		$do_contact = `FALSE`,
		$do_update
	)

Deprecated:: Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_import_multiple_publications().

See also: chado_import_multiple_publications().

◆ tripal_pub_import_publications()

tripal_pub_import_publications	(	$report_email = `FALSE`,
		$do_update = `FALSE`
	)

Deprecated:: Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_import_multiple_publications().

See also: chado_import_multiple_publications().

◆ tripal_pub_import_publications_by_import_id()

tripal_pub_import_publications_by_import_id	(	$import_id,
		$job_id = `NULL`
	)

Deprecated:: Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_import_multiple_publications().

See also: chado_import_multiple_publications().

◆ tripal_pub_insert_property()

tripal_pub_insert_property	(	$pub_id,
		$property,
		$value,
		$update_if_present = `0`
	)

Deprecated:: Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_insert_property().

See also: chado_insert_property().

◆ tripal_pub_update_property()

tripal_pub_update_property	(	$pub_id,
		$property,
		$value,
		$insert_if_missing = `0`
	)

Deprecated:: Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_update_property().

See also: chado_update_property().

◆ tripal_pub_update_publications()

tripal_pub_update_publications	(	$do_contact = `FALSE`,
		$dbxref = `NULL`,
		$db = `NULL`
	)

Deprecated:: Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_update_multiple_publications().

See also: chado_update_multiple_publications().

Functions