Tripal
Functions
tripal_feature.DEPRECATED.inc File Reference

Functions

 tripal_feature_analysis_get_property ($analysis_id=NULL, $feature_id=NULL, $analysisfeature_id=NULL, $property, $cv_name='tripal')
 
 tripal_feature_analysis_insert_property ($analysis_id=NULL, $feature_id=NULL, $analysisfeature_id=NULL, $property, $value, $update_if_present=0, $cv_name='tripal')
 
 tripal_feature_analysis_update_property ($analysis_id=NULL, $feature_id=NULL, $analysisfeature_id=NULL, $property, $value, $insert_if_missing=0, $cv_name='tripal')
 
 tripal_feature_analysis_update_property_by_id ($analysisfeatureprop_id, $property, $value, $cv_name='tripal')
 
 tripal_feature_analysis_delete_property ($analysis_id=NULL, $feature_id=NULL, $analysisfeature_id=NULL, $property, $cv_name='tripal')
 
 tripal_feature_analysis_delete_property_by_id ($analysisfeatureprop_id)
 
 tripal_feature_get_property ($feature_id, $property, $cv_name='tripal')
 
 tripal_feature_insert_property ($feature_id, $property, $value, $update_if_present=0, $cv_name='tripal')
 
 tripal_feature_update_property ($feature_id, $property, $value, $insert_if_missing=0, $cv_name='tripal')
 
 tripal_feature_update_property_by_id ($featureprop_id, $property, $value, $cv_name='tripal')
 
 tripal_feature_delete_property ($feature_id, $property, $cv_name='tripal')
 
 tripal_feature_delete_property_by_id ($featureprop_id)
 
 tripal_feature_reverse_complement ($sequence)
 
 tripal_feature_add_dbxref ($feature_id, $dbname, $accession)
 
 tripal_feature_add_cvterm ($feature_id, $cvname, $cvterm)
 

Detailed Description

Wrapper functions to provide backwards compatibility for the tripal feature api

Function Documentation

◆ tripal_feature_add_cvterm()

tripal_feature_add_cvterm (   $feature_id,
  $cvname,
  $cvterm 
)
Deprecated:
Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by tripal_associate_cvterm().
See also
tripal_associate_cvterm().

◆ tripal_feature_add_dbxref()

tripal_feature_add_dbxref (   $feature_id,
  $dbname,
  $accession 
)
Deprecated:
Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by tripal_associate_dbxref().
See also
tripal_associate_dbxref().

◆ tripal_feature_analysis_delete_property()

tripal_feature_analysis_delete_property (   $analysis_id = NULL,
  $feature_id = NULL,
  $analysisfeature_id = NULL,
  $property,
  $cv_name = 'tripal' 
)
Deprecated:
Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_delete_property().
See also
chado_delete_property().

◆ tripal_feature_analysis_delete_property_by_id()

tripal_feature_analysis_delete_property_by_id (   $analysisfeatureprop_id)
Deprecated:
Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_delete_record().
See also
chado_delete_record().

◆ tripal_feature_analysis_get_property()

tripal_feature_analysis_get_property (   $analysis_id = NULL,
  $feature_id = NULL,
  $analysisfeature_id = NULL,
  $property,
  $cv_name = 'tripal' 
)
Deprecated:
Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_get_property().
See also
chado_get_property().

◆ tripal_feature_analysis_insert_property()

tripal_feature_analysis_insert_property (   $analysis_id = NULL,
  $feature_id = NULL,
  $analysisfeature_id = NULL,
  $property,
  $value,
  $update_if_present = 0,
  $cv_name = 'tripal' 
)
Deprecated:
Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_insert_property().
See also
chado_insert_property().

◆ tripal_feature_analysis_update_property()

tripal_feature_analysis_update_property (   $analysis_id = NULL,
  $feature_id = NULL,
  $analysisfeature_id = NULL,
  $property,
  $value,
  $insert_if_missing = 0,
  $cv_name = 'tripal' 
)
Deprecated:
Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_update_property().
See also
chado_update_property().

◆ tripal_feature_analysis_update_property_by_id()

tripal_feature_analysis_update_property_by_id (   $analysisfeatureprop_id,
  $property,
  $value,
  $cv_name = 'tripal' 
)
Deprecated:
Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_update_property().
See also
chado_update_property().

◆ tripal_feature_delete_property()

tripal_feature_delete_property (   $feature_id,
  $property,
  $cv_name = 'tripal' 
)
Deprecated:
Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_delete_property().
See also
chado_delete_property().

◆ tripal_feature_delete_property_by_id()

tripal_feature_delete_property_by_id (   $featureprop_id)
Deprecated:
Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_delete_record().
See also
chado_delete_record().

◆ tripal_feature_get_property()

tripal_feature_get_property (   $feature_id,
  $property,
  $cv_name = 'tripal' 
)
Deprecated:
Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_get_property().
See also
chado_get_property().

◆ tripal_feature_insert_property()

tripal_feature_insert_property (   $feature_id,
  $property,
  $value,
  $update_if_present = 0,
  $cv_name = 'tripal' 
)
Deprecated:
Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_insert_property().
See also
chado_insert_property().

◆ tripal_feature_reverse_complement()

tripal_feature_reverse_complement (   $sequence)
Deprecated:
Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by tripal_reverse_compliment_sequence().
See also
tripal_reverse_compliment_sequence().

◆ tripal_feature_update_property()

tripal_feature_update_property (   $feature_id,
  $property,
  $value,
  $insert_if_missing = 0,
  $cv_name = 'tripal' 
)
Deprecated:
Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_update_property().
See also
chado_update_property().

◆ tripal_feature_update_property_by_id()

tripal_feature_update_property_by_id (   $featureprop_id,
  $property,
  $value,
  $cv_name = 'tripal' 
)
Deprecated:
Restructured API to make naming more readable and consistent. Function was deprecated in Tripal 2.0 and will be removed 2 releases from now. This function has been replaced by chado_update_property().
See also
chado_update_property().