Tripal
|
Functions | |
chado_get_id_for_node ($table, $node) | |
chado_get_node_id ($table, $id) | |
tripal_core_chado_node_cleanup_orphaned ($table, $job_id=NULL) | |
chado_node_additional_dbxrefs_form (&$form, &$form_state, $details) | |
chado_node_additional_dbxrefs_form_retreive ($node) | |
chado_node_additional_dbxrefs_form_update_dbxrefs ($node, $details, $retrieved_dbxrefs=FALSE) | |
chado_node_properties_form ($form, &$form_state, $details) | |
chado_node_properties_form_retreive ($node) | |
chado_node_properties_form_update_properties ($node, $details, $retrieved_properties=FALSE) | |
chado_node_relationships_form (&$form, &$form_state, $details) | |
chado_node_relationships_form_retreive ($node) | |
chado_node_relationships_form_update_relationships ($node, $details, $retrieved_relationships=FALSE) | |
tripal_core_chado_node_sync_form ($form, &$form_state) | |
tripal_core_chado_node_sync_records ($base_table, $max_sync=FALSE, $organism_id=FALSE, $types=[], $ids=[], $job_id=NULL) | |
tripal_core_is_tripal_node_type () | |
tripal_core_chado_get_foreign_key ($table_desc, $field, $values, $options=NULL) | |
tripal_core_chado_delete ($table, $match, $options=NULL) | |
tripal_core_expand_chado_vars ($object, $type, $to_expand, $table_options=[]) | |
tripal_core_generate_chado_var ($table, $values, $base_options=[]) | |
tripal_core_chado_insert ($table, $values, $options=[]) | |
tripal_core_chado_select ($table, $columns, $values, $options=NULL) | |
tripal_core_chado_update ($table, $match, $values, $options=NULL) | |
tripal_create_moddir ($module_name) | |
tripal_create_mod_subdir ($module_name, $path) | |
tripal_file_directory_path () | |
tripal_get_moddir ($module_name) | |
tripal_jobs_cancel ($job_id, $redirect=TRUE) | |
tripal_get_module_active_jobs ($modulename) | |
tripal_jobs_get_end_time ($job) | |
tripal_jobs_get_start_time ($job) | |
tripal_jobs_get_submit_date ($job) | |
tripal_jobs_check_running () | |
tripal_jobs_launch ($do_parallel=0, $job_id=NULL) | |
tripal_jobs_rerun ($job_id, $goto_jobs_page=TRUE) | |
tripal_job_set_progress ($job_id, $percentage) | |
tripal_mviews_action ($op, $mview_id, $redirect=FALSE) | |
tripal_add_legacy_mview ($name, $modulename, $mv_table, $mv_specs, $indexed, $query, $special_index, $comment) | |
tripal_update_mview ($mview_id) | |
tripal_mviews_get_mview_id ($view_name) | |
tripal_core_delete_property_by_id ($basetable, $property_id) | |
tripal_core_delete_property ($basetable, $record_id, $property, $cv_name) | |
tripal_core_get_property ($basetable, $record_id, $property, $cv_name) | |
tripal_get_max_chado_rank ($tablename, $where_options) | |
get_max_chado_rank ($tablename, $where_options) | |
tripal_core_insert_property ($basetable, $record_id, $property, $cv_name, $value, $update_if_present=0) | |
tripal_core_update_property_by_id ($basetable, $record_id, $property, $cv_name, $value) | |
tripal_core_update_property ($basetable, $record_id, $property, $cv_name, $value, $insert_if_missing=0) | |
tripal_core_create_custom_table (&$ret, $table, $schema, $skip_creation=1) | |
tripal_core_edit_custom_table ($table_id, $table_name, $schema, $skip_creation=1) | |
tripal_custom_tables_get_table_id ($table_name) | |
tripal_get_chado_custom_schema ($table) | |
tripal_core_is_chado_installed () | |
tripal_core_get_chado_table_schema ($table) | |
tripal_core_get_chado_version ($exact=FALSE, $warn_if_unsupported=FALSE) | |
tripal_db_set_active ($dbname='default') | |
tripal_core_is_chado_local () | |
tripal_core_get_chado_tables ($include_custom=NULL) | |
tripal_core_chado_schema_exists () | |
tripal_core_schema_exists ($schema) | |
tripal_core_report_error ($type, $severity, $message, $variables=[], $options=[]) | |
Contains all the deprecated functions to keep the tripal api backwards compatible.
chado_get_id_for_node | ( | $table, | |
$node | |||
) |
chado_get_node_id | ( | $table, | |
$id | |||
) |
chado_node_additional_dbxrefs_form | ( | & | $form, |
& | $form_state, | ||
$details | |||
) |
chado_node_additional_dbxrefs_form_retreive | ( | $node | ) |
chado_node_additional_dbxrefs_form_update_dbxrefs | ( | $node, | |
$details, | |||
$retrieved_dbxrefs = FALSE |
|||
) |
chado_node_properties_form | ( | $form, | |
& | $form_state, | ||
$details | |||
) |
chado_node_properties_form_retreive | ( | $node | ) |
chado_node_properties_form_update_properties | ( | $node, | |
$details, | |||
$retrieved_properties = FALSE |
|||
) |
chado_node_relationships_form | ( | & | $form, |
& | $form_state, | ||
$details | |||
) |
chado_node_relationships_form_retreive | ( | $node | ) |
chado_node_relationships_form_update_relationships | ( | $node, | |
$details, | |||
$retrieved_relationships = FALSE |
|||
) |
get_max_chado_rank | ( | $tablename, | |
$where_options | |||
) |
tripal_add_legacy_mview | ( | $name, | |
$modulename, | |||
$mv_table, | |||
$mv_specs, | |||
$indexed, | |||
$query, | |||
$special_index, | |||
$comment | |||
) |
tripal_core_chado_delete | ( | $table, | |
$match, | |||
$options = NULL |
|||
) |
tripal_core_chado_get_foreign_key | ( | $table_desc, | |
$field, | |||
$values, | |||
$options = NULL |
|||
) |
tripal_core_chado_insert | ( | $table, | |
$values, | |||
$options = [] |
|||
) |
tripal_core_chado_node_cleanup_orphaned | ( | $table, | |
$job_id = NULL |
|||
) |
tripal_core_chado_node_sync_form | ( | $form, | |
& | $form_state | ||
) |
tripal_core_chado_node_sync_records | ( | $base_table, | |
$max_sync = FALSE , |
|||
$organism_id = FALSE , |
|||
$types = [] , |
|||
$ids = [] , |
|||
$job_id = NULL |
|||
) |
tripal_core_chado_schema_exists | ( | ) |
tripal_core_chado_select | ( | $table, | |
$columns, | |||
$values, | |||
$options = NULL |
|||
) |
tripal_core_chado_update | ( | $table, | |
$match, | |||
$values, | |||
$options = NULL |
|||
) |
tripal_core_create_custom_table | ( | & | $ret, |
$table, | |||
$schema, | |||
$skip_creation = 1 |
|||
) |
tripal_core_delete_property | ( | $basetable, | |
$record_id, | |||
$property, | |||
$cv_name | |||
) |
tripal_core_delete_property_by_id | ( | $basetable, | |
$property_id | |||
) |
tripal_core_edit_custom_table | ( | $table_id, | |
$table_name, | |||
$schema, | |||
$skip_creation = 1 |
|||
) |
tripal_core_expand_chado_vars | ( | $object, | |
$type, | |||
$to_expand, | |||
$table_options = [] |
|||
) |
tripal_core_generate_chado_var | ( | $table, | |
$values, | |||
$base_options = [] |
|||
) |
tripal_core_get_chado_table_schema | ( | $table | ) |
tripal_core_get_chado_tables | ( | $include_custom = NULL | ) |
tripal_core_get_chado_version | ( | $exact = FALSE , |
|
$warn_if_unsupported = FALSE |
|||
) |
tripal_core_get_property | ( | $basetable, | |
$record_id, | |||
$property, | |||
$cv_name | |||
) |
tripal_core_insert_property | ( | $basetable, | |
$record_id, | |||
$property, | |||
$cv_name, | |||
$value, | |||
$update_if_present = 0 |
|||
) |
tripal_core_is_chado_installed | ( | ) |
tripal_core_is_chado_local | ( | ) |
tripal_core_is_tripal_node_type | ( | ) |
tripal_core_report_error | ( | $type, | |
$severity, | |||
$message, | |||
$variables = [] , |
|||
$options = [] |
|||
) |
function theme_tripal_admin_message($variables) { tripal_report_error( 'tripal_deprecated', TRIPAL_NOTICE, "DEPRECATED: %old_function has been replaced with %new_function. Please update your code.", array( 'old_function'=>'chado_get_id_for_node', 'new_function' => 'chado_get_id_from_nid' ) );
//New API Function return tripal_set_admin_message(); }
tripal_core_schema_exists | ( | $schema | ) |
tripal_core_update_property | ( | $basetable, | |
$record_id, | |||
$property, | |||
$cv_name, | |||
$value, | |||
$insert_if_missing = 0 |
|||
) |
tripal_core_update_property_by_id | ( | $basetable, | |
$record_id, | |||
$property, | |||
$cv_name, | |||
$value | |||
) |
tripal_create_mod_subdir | ( | $module_name, | |
$path | |||
) |
tripal_create_moddir | ( | $module_name | ) |
tripal_custom_tables_get_table_id | ( | $table_name | ) |
tripal_db_set_active | ( | $dbname = 'default' | ) |
tripal_file_directory_path | ( | ) |
tripal_get_chado_custom_schema | ( | $table | ) |
tripal_get_max_chado_rank | ( | $tablename, | |
$where_options | |||
) |
tripal_get_moddir | ( | $module_name | ) |
tripal_get_module_active_jobs | ( | $modulename | ) |
tripal_job_set_progress | ( | $job_id, | |
$percentage | |||
) |
tripal_jobs_cancel | ( | $job_id, | |
$redirect = TRUE |
|||
) |
tripal_jobs_check_running | ( | ) |
tripal_jobs_get_end_time | ( | $job | ) |
tripal_jobs_get_start_time | ( | $job | ) |
tripal_jobs_get_submit_date | ( | $job | ) |
tripal_jobs_launch | ( | $do_parallel = 0 , |
|
$job_id = NULL |
|||
) |
tripal_jobs_rerun | ( | $job_id, | |
$goto_jobs_page = TRUE |
|||
) |
tripal_mviews_action | ( | $op, | |
$mview_id, | |||
$redirect = FALSE |
|||
) |
tripal_mviews_get_mview_id | ( | $view_name | ) |
tripal_update_mview | ( | $mview_id | ) |