| $chado (defined in Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| $chado_schema (defined in Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| $red_format (defined in Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| $yellow_format (defined in Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| chadoCheckTerms_checkIdSpaces(array $vocab_info, array &$problems, array &$solutions) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| chadoCheckTerms_checkTerm(array $term_info, array &$problems, array &$solutions) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| chadoCheckTerms_checkVocab(array $vocab_info, array &$problems, array &$solutions) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| chadoCheckTerms_findCVProblems(&$problems, &$solutions, &$summary_rows, $options) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| chadoCheckTerms_findProblems(&$problems, &$solutions, &$summary_rows, $options) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| chadoCheckTerms_printSummaryTable(array $summary_rows) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| chadoCheckTerms_reportProblem_eccentricCv($problems, $solutions, $options) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| chadoCheckTerms_reportProblem_eccentricCVTerm($problems, $solutions, $options) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| chadoCheckTerms_reportProblem_eccentricDb($problems, $solutions, $options) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| chadoCheckTerms_reportProblem_missingDbYaml($problems, $solutions, $options) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| chadoCheckTerms_reportProblem_obsoleteCv($problems, $solutions, $options) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| chadoCheckTerms_reportProblem_terms($problems, $solutions, $options) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| chadoCheckTerms_reportProblem_yamlDuplication($problems, $solutions, $options) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| chadoCheckTerms_reportProblems($problems, $solutions, $summary_rows, $options) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| chadoCheckTermsAreAsExpected($options=['chado_schema'=> NULL, 'auto-expand'=> FALSE, 'auto-fix'=> FALSE, 'no-fix'=> FALSE]) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | |
| migrateObsoleteVocabularies(array $cv_ids) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
| updateChadoTermRecords(string $table_name, string $pkey, array $records) | Drupal\tripal_chado\Commands\ChadoCheckTermsAgainstYaml | protected |
