Drupal\Tests\tripal_chado\Functional\OboImporterTest Class Reference

Inheritance diagram for Drupal\Tests\tripal_chado\Functional\OboImporterTest:

Collaboration diagram for Drupal\Tests\tripal_chado\Functional\OboImporterTest:

Public Member Functions
	retrieveCurrentScenario (int $current_scenario_key, string $current_scenario_label)

Static Public Member Functions
static	provideScenarios ()

Protected Member Functions
	setUp ()
	populateMviewSql ()
Protected Member Functions inherited from Drupal\Tests\tripal_chado\Kernel\ChadoTestKernelBase
	prepareEnvironment (array $functionality)

Protected Attributes
string	$yaml_info_file = __DIR__ . '/OboImporter-TestInfo.yml'
object	$drupal_connection
object	$chado_connection
array	$mock_messages = []
	$user
array	$system_under_test
array	$scenarios
Protected Attributes inherited from Drupal\Tests\tripal\Kernel\TripalTestKernelBase
	$messenger = NULL
	$logger = NULL
	$fileretriever = NULL
	$publish_manager = NULL

Static Protected Attributes
static	$modules = ['user', 'tripal', 'tripal_chado', 'tripal_biodb']
Static Protected Attributes inherited from Drupal\Tests\tripal_chado\Kernel\ChadoTestKernelBase
static	$modules = ['tripal', 'tripal_biodb', 'tripal_chado']
Static Protected Attributes inherited from Drupal\Tests\tripal\Kernel\TripalTestKernelBase
static	$modules = ['tripal']

Additional Inherited Members
Public Attributes inherited from Drupal\Tests\tripal_chado\Kernel\ChadoTestKernelBase
const	SCHEMA_NAME_ONLY = 0
const	CREATE_SCHEMA = 1
const	INIT_DUMMY = 2
const	INIT_CHADO_EMPTY = 3
const	INIT_CHADO_DUMMY = 4
const	PREPARE_TEST_CHADO = 5

Detailed Description

Tests for the OBO ontology importer.

@group TripalImporter @group ChadoImporter @group OntologyImporter

Member Function Documentation

populateMviewSql()

Drupal\Tests\tripal_chado\Functional\OboImporterTest::populateMviewSql ( )

protected

Sets up the two materialized views needed for the importer.

The mviews are populated when the importer postRun() is called.

provideScenarios()

static Drupal\Tests\tripal_chado\Functional\OboImporterTest::provideScenarios ( )

static

Data Provider: works with the YAML to provide scenarios for testing.

Returns

array List of scenarios to test where each one matches a key and label in the associated YAML scenarios.

retrieveCurrentScenario()

Drupal\Tests\tripal_chado\Functional\OboImporterTest::retrieveCurrentScenario	(	int	$current_scenario_key,
		string	$current_scenario_label
	)

Retrieves the current scenario based on the data provider.

NOTE: Also ensures the type_ids match what is currently in the database.

Parameters

int	$current_scenario_key	The key of the scenario in the YAML.
string	$current_scenario_label	The label of the scenario in the YAML.

Returns

array The scenario to be tested as defined in the YAML.

setUp()

Drupal\Tests\tripal_chado\Functional\OboImporterTest::setUp ( )

protected

{{{}}}

Reimplemented from Drupal\Tests\tripal_chado\Kernel\ChadoTestKernelBase.

Member Data Documentation

$modules

Drupal\Tests\tripal_chado\Functional\OboImporterTest::$modules = ['user', 'tripal', 'tripal_chado', 'tripal_biodb']

staticprotected

{}

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The documentation for this class was generated from the following file:

• tripal_chado/tests/src/Kernel/Plugin/TripalImporter/OboImporterTest.php