tripal_core.chado_nodes.api.inc File Reference

Functions
	chado_get_id_from_nid ($table, $nid, $linking_table=NULL)
	chado_get_nid_from_id ($table, $id, $linking_table=NULL)
	chado_node_get_base_table ($content_type, $module=FALSE)
	chado_validate_node_form_triggering_element ($form, &$form_state)
	chado_add_node_form_subtables_add_button_validate ($form, &$form_state)
	chado_add_node_form_subtables_add_button_submit ($form, &$form_state)
	chado_add_node_form_subtables_remove_button_validate ($form, &$form_state)
	chado_add_node_form_subtables_remove_button_submit ($form, &$form_state)
	chado_add_node_form_subtable_ajax_update ($form, &$form_state)
	chado_node_sync_form ($form, &$form_state)
	chado_node_sync_form_validate ($form, &$form_state)
	chado_node_sync_form_submit ($form, $form_state)
	chado_node_sync_records ($base_table, $max_sync=FALSE, $organism_id=FALSE, $types=[], $ids=[], $linking_table=FALSE, $node_type=FALSE, $job_id=NULL)
	chado_cleanup_orphaned_nodes ($table, $nentries=25000, $linking_table=NULL, $node_type=NULL, $job_id=NULL)
	chado_cleanup_orphaned_nodes_part ($table, $job_id=NULL, $nentries, $offset, $linking_table, $node_type)
	hook_chado_node_sync_create_new_node ($new_node, $record)
	hook_chado_node_sync_form ($form, &$form_state)
	hook_chado_node_sync_form_submit ($form, $form_state)
	hook_chado_node_sync_select_query ($query)

Detailed Description

API to handle much of the common functionality implemented when creating a drupal node type.

Function Documentation

chado_add_node_form_subtable_ajax_update()

chado_add_node_form_subtable_ajax_update	(		$form,
		&	$form_state
	)

Ajax function which returns the section of the form to be re-rendered for either the properties, dbxref or relationship sub-sections.

chado_add_node_form_subtables_add_button_submit()

chado_add_node_form_subtables_add_button_submit	(		$form,
		&	$form_state
	)

Add subtable entries to the node forms. Supported subtables: Properties, Relationships, Additional DBxrefs.

Parameters

array	$form
array	$form_state

chado_add_node_form_subtables_add_button_validate()

chado_add_node_form_subtables_add_button_validate	(		$form,
		&	$form_state
	)

Validate Adding Subtables entries from the node forms. Supported subtables: Properties, Relationships, Additional DBxrefs.

Parameters

array	$form
array	$form_state

chado_add_node_form_subtables_remove_button_submit()

chado_add_node_form_subtables_remove_button_submit	(		$form,
		&	$form_state
	)

Remove subtable entries to the node forms. Supported subtables: Properties, Relationships, Additional DBxrefs.

Parameters

array	$form
array	$form_state

chado_add_node_form_subtables_remove_button_validate()

chado_add_node_form_subtables_remove_button_validate	(		$form,
		&	$form_state
	)

Validate Removing Subtables entries from the node forms. Supported subtables: Properties, Relationships, Additional DBxrefs.

Since Removing isn't associated with any user input the only thing we need to validate is that Drupal has determined the triggering element correctly. That said, we will call each subtables associated validate function just incase there is some case-specific validation we do not know of or have not anticipated.

Parameters

array	$form
array	$form_state

chado_node_sync_form_submit()

chado_node_sync_form_submit	(		$form,
			$form_state
	)

Generic Sync Form Submit

chado_node_sync_form_validate()

chado_node_sync_form_validate	(		$form,
		&	$form_state
	)

Generic Sync Form Validate

chado_validate_node_form_triggering_element()

chado_validate_node_form_triggering_element	(		$form,
		&	$form_state
	)