tripal_chado.phylotree.inc File Reference

Functions
	tripal_phylogeny_prepare_tree_viewer ($phylotree)
	tripal_phylogeny_ajax_get_tree_json ($phylotree_id)
	tripal_phylogeny_admin_phylotrees_listing ()
	tripal_phylogeny_default_plots_form ($form, &$form_state)
	tripal_phylogeny_default_plots_form_validate ($form, &$form_state)
	tripal_phylogeny_default_plots_form_submit ($form, &$form_state)
	theme_tripal_phylogeny_admin_org_color_tables ($variables)
	tripal_phylogeny_default_plots_form_ajax_callback ($form, $form_state)

Detailed Description

This file contains the functions used for administration of the module

Function Documentation

theme_tripal_phylogeny_admin_org_color_tables()

theme_tripal_phylogeny_admin_org_color_tables

(

$variables

)

Parameters

unknown

$variables

tripal_phylogeny_ajax_get_tree_json()

tripal_phylogeny_ajax_get_tree_json

(

$phylotree_id

)

Get json representation of a phylotree id.

This function is meant to be called via AJAX.

Parameters

int

$phylotree_id

the ID of the phylotree node.

Returns

string json

tripal_phylogeny_default_plots_form()

tripal_phylogeny_default_plots_form	(		$form,
		&	$form_state
	)

Parameters

unknown	$form
unknown	$form_state

tripal_phylogeny_default_plots_form_ajax_callback()

tripal_phylogeny_default_plots_form_ajax_callback	(		$form,
			$form_state
	)

Ajax callback function for the gensas_job_view_panel_form.

Parameters

$form
$form_state

tripal_phylogeny_default_plots_form_submit()

tripal_phylogeny_default_plots_form_submit	(		$form,
		&	$form_state
	)

Parameters

unknown	$form
unknown	$form_state

tripal_phylogeny_default_plots_form_validate()

tripal_phylogeny_default_plots_form_validate	(		$form,
		&	$form_state
	)

Validate the phylotree settings forms

tripal_phylogeny_prepare_tree_viewer()

tripal_phylogeny_prepare_tree_viewer

(

$phylotree

)

Prepares a phylogenetic tree for viewing.

Parameters

$phylotree