TripalProteinFASTADownloader Class Reference

Inheritance diagram for TripalProteinFASTADownloader:

Collaboration diagram for TripalProteinFASTADownloader:

Static Public Attributes
static	$label = 'FASTA'
static	$full_label = 'Protein FASTA'
static	$default_extension = 'faa'
Static Public Attributes inherited from TripalFieldDownloader
static	$label = 'Generic'
static	$full_label = 'Generic File format'
static	$default_extension = 'txt'

Protected Member Functions
	formatEntity ($entity)
	getHeader ()
Protected Member Functions inherited from TripalFieldDownloader
	setFields ()
	setFields2Terms ()
	setPrintableFields ()

Additional Inherited Members
Public Member Functions inherited from TripalFieldDownloader
	__construct ($collection_id, $outfile_name)
	isFieldSupported ($field, $instance)
	getURL ()
	delete ()
	writeInit (TripalJob $job=NULL)
	writeEntity ($entity, TripalJob $job=NULL)
	writeDone (TripalJob $job=NULL)
	write (TripalJob $job=NULL)
	download ()
Protected Attributes inherited from TripalFieldDownloader
	$collection = NULL
	$collection_id = NULL
	$collection_bundles = NULL
	$outfile = ''
	$printable_fields = []
	$remote_entity = ''
	$fields2terms = []
	$fields = []
	$fh

Member Function Documentation

formatEntity()

TripalProteinFASTADownloader::formatEntity (   $entity )

protected

See also

TripalFieldDownloader::format()

Reimplemented from TripalFieldDownloader.

getHeader()

TripalProteinFASTADownloader::getHeader ( )

protected

See also

TripalFieldDownloader::getHeader()

Reimplemented from TripalFieldDownloader.

Member Data Documentation

$default_extension

TripalProteinFASTADownloader::$default_extension = 'faa'

static

Indicates the default extension for the outputfile.

$full_label

TripalProteinFASTADownloader::$full_label = 'Protein FASTA'

static

A more verbose label that better describes the formatter.

$label

TripalProteinFASTADownloader::$label = 'FASTA'

static

Sets the label shown to the user describing this formatter. It should be a short identifier. Use the $full_label for a more descriptive label.

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The documentation for this class was generated from the following file:

• tripal/includes/TripalFieldDownloaders/TripalProteinFASTADownloader.inc