Drupal\Tests\tripal_chado\Kernel\Plugin\ChadoStorage\ChadoStorageLinkerFieldTest Class Reference

Inheritance diagram for Drupal\Tests\tripal_chado\Kernel\Plugin\ChadoStorage\ChadoStorageLinkerFieldTest:

Collaboration diagram for Drupal\Tests\tripal_chado\Kernel\Plugin\ChadoStorage\ChadoStorageLinkerFieldTest:

Public Member Functions
	testLinkerTableField ($linker_field_name, $linker_table_name, $right_table_id, $extra_values)

Static Public Member Functions
static	provideTestCases ()

Protected Member Functions
	setUp ()
Protected Member Functions inherited from Drupal\Tests\tripal_chado\Kernel\ChadoTestKernelBase
	prepareEnvironment (array $functionality)

Protected Attributes
	$fields = []
	$yaml_file = __DIR__ . "/ChadoStorageLinkerFields-FieldDefinitions.yml"
int	$organism_id
int	$cvterm_id
array	$right_id
Protected Attributes inherited from Drupal\Tests\tripal\Kernel\TripalTestKernelBase
	$messenger = NULL
	$logger = NULL
	$fileretriever = NULL
	$publish_manager = NULL

Additional Inherited Members
Public Attributes inherited from Drupal\Tests\tripal_chado\Kernel\ChadoTestKernelBase
const	SCHEMA_NAME_ONLY = 0
const	CREATE_SCHEMA = 1
const	INIT_DUMMY = 2
const	INIT_CHADO_EMPTY = 3
const	INIT_CHADO_DUMMY = 4
const	PREPARE_TEST_CHADO = 5
Static Protected Attributes inherited from Drupal\Tests\tripal_chado\Kernel\ChadoTestKernelBase
static	$modules = ['tripal', 'tripal_biodb', 'tripal_chado']
Static Protected Attributes inherited from Drupal\Tests\tripal\Kernel\TripalTestKernelBase
static	$modules = ['tripal']

Detailed Description

Test chado storage.

Tests that ChadoStorage can handle fields for linker tables as we expect. The array of fields/properties used for these tests are designed to match those for a variety of linker tables as examples since the fields are note yet developed. These are the specific cases tested:

• synonymfield: feature > feature_synonym.
• analysisfield: feature > analysisfeature.
• contactfield: feature > feature_contact.
• relationshipfield: feature > feature_relationship.

Note: testotherfeaturefield is added to ensure we meet the unique constraint on the base table and also to ensure we are testing multi-field functionality.

Note: We do not need to test invalid conditions for createValues() and updateValues() as these are only called after the entity has validated the system using validateValues(). Instead we test all invalid conditions are caught by validateValues().

Specific test cases Test the following for both single and multiple property fields:

• [SINGLE FIELD ONLY] Create Values in Chado when they don't yet exist.
• [SINGLE FIELD ONLY] Load values in Chado after we just inserted them.
• [SINGLE FIELD ONLY] Update values in Chado after we just inserted them.
• [NOT IMPLEMENTED] Delete values in Chado using ChadoStorage.

@group Tripal @group Tripal Chado @group ChadoStorage @group ChadoStorage Fields

Member Function Documentation

provideTestCases()

static Drupal\Tests\tripal_chado\Kernel\Plugin\ChadoStorage\ChadoStorageLinkerFieldTest::provideTestCases ( )

static

Data Provider: define each test case.

setUp()

Drupal\Tests\tripal_chado\Kernel\Plugin\ChadoStorage\ChadoStorageLinkerFieldTest::setUp ( )

protected

{{{}}}

Reimplemented from Drupal\Tests\tripal_chado\Kernel\ChadoTestKernelBase.

testLinkerTableField()

Drupal\Tests\tripal_chado\Kernel\Plugin\ChadoStorage\ChadoStorageLinkerFieldTest::testLinkerTableField	(		$linker_field_name,
			$linker_table_name,
			$right_table_id,
			$extra_values
	)

Testing ChadoStorage on linker fields.

Test Cases:

• Create Values in Chado using ChadoStorage when they don't yet exist.
• Load values in Chado using ChadoStorage after we just inserted them.
• Update values in Chado using ChadoStorage after we just inserted them.
• [NOT IMPLEMENTED] Delete values in Chado using ChadoStorage.
• [NOT IMPLEMENTED] Ensure property field picks up records in Chado not added through field.

Parameters provided by provideTestCases().

Parameters

string	$linker_field_name	The specific field in $fields to be used for the current test case.
string	$linker_table_name	The name of the chado linker table we are testing in the field specified by $linker_field_name.
string	$right_table_id	The primary key for the right table in the link.
array	$extra_values	The values for the extra fields specific to each linker table where the key is the property key and the value is the value we should set it to.

@dataProvider provideTestCases

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The documentation for this class was generated from the following file:

• tripal_chado/tests/src/Kernel/Plugin/ChadoStorage/ChadoStorageLinkerFieldTest.php