Drupal\Tests\tripal_chado\Kernel\Plugin\ChadoStorage\ChadoAnalysisDefaultTest Class Reference

Inheritance diagram for Drupal\Tests\tripal_chado\Kernel\Plugin\ChadoStorage\ChadoAnalysisDefaultTest:

Collaboration diagram for Drupal\Tests\tripal_chado\Kernel\Plugin\ChadoStorage\ChadoAnalysisDefaultTest:

Public Member Functions
	testPhylotreeBaseTableFieldCRUD ()
	testQuantificationBaseTableFieldCRUD ()

Protected Member Functions
	setUp ()

Protected Attributes
	$fields = []
	$yaml_file = __DIR__ . "/ChadoAnalysisDefault-FieldDefinitions.yml"
array	$analysis_id

Additional Inherited Members
Public Attributes inherited from Drupal\Tests\tripal_chado\Kernel\ChadoTestKernelBase
const	SCHEMA_NAME_ONLY = 0
const	CREATE_SCHEMA = 1
const	INIT_DUMMY = 2
const	INIT_CHADO_EMPTY = 3
const	INIT_CHADO_DUMMY = 4
const	PREPARE_TEST_CHADO = 5
Static Protected Attributes inherited from Drupal\Tests\tripal_chado\Kernel\ChadoTestKernelBase
static	$modules = ['tripal', 'tripal_biodb', 'tripal_chado']

Detailed Description

Tests that ChadoStorage can handle property fields as we expect. The array of fields/properties used for these tests are designed to match those in the ChadoAnalysisDefault field with values filled based on two base tables: phylotree, quantification.

Note: quantification is not a typically created content type but we can test it in this manner anyway as the tests are in the kernel environment and do not interact with content types and fields attached to them but rather focuses on the property types/values directly. This also allows us to test phylotree directly even though at the time of writing this test, there is no dbxref_id field attached to phylotree.

Note: testotherphylotreefield and testotherquantificationfield are added to ensure we meet the unique constraints on the phylotree and quantification tables respectively.

Specific test cases:

• [PHYLOTREE] Create Values in Chado using ChadoStorage when they don't yet exist.
• [PHYLOTREE] Load values in Chado using ChadoStorage after we just inserted them.
• [PHYLOTREE] Update values in Chado using ChadoStorage after we just inserted them.
• [QUANTIFICATION] Create Values in Chado using ChadoStorage when they don't yet exist.
• [QUANTIFICATION] Load values in Chado using ChadoStorage after we just inserted them.
• [QUANTIFICATION] Update values in Chado using ChadoStorage after we just inserted them.

@group Tripal @group Tripal Chado @group ChadoStorage @group ChadoStorage Fields

Member Function Documentation

setUp()

Drupal\Tests\tripal_chado\Kernel\Plugin\ChadoStorage\ChadoAnalysisDefaultTest::setUp ( )

protected

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Reimplemented from Drupal\Tests\tripal_chado\Kernel\ChadoTestKernelBase.

testPhylotreeBaseTableFieldCRUD()

Drupal\Tests\tripal_chado\Kernel\Plugin\ChadoStorage\ChadoAnalysisDefaultTest::testPhylotreeBaseTableFieldCRUD

(

)

Testing ChadoStorage with the ChadoAnalysisDefault field on a phylotree content type.

Test Cases:

• Create Values in Chado using ChadoStorage when they don't yet exist.
• Load values in Chado using ChadoStorage after we just inserted them.
• Update values in Chado using ChadoStorage after we just inserted them.

testQuantificationBaseTableFieldCRUD()

Drupal\Tests\tripal_chado\Kernel\Plugin\ChadoStorage\ChadoAnalysisDefaultTest::testQuantificationBaseTableFieldCRUD

(

)

Testing ChadoStorage with the ChadoAnalysisDefault field on a quantification content type.

Test Cases:

• Create Values in Chado using ChadoStorage when they don't yet exist.
• Load values in Chado using ChadoStorage after we just inserted them.
• Update values in Chado using ChadoStorage after we just inserted them.

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The documentation for this class was generated from the following file:

• tripal_chado/tests/src/Kernel/Plugin/ChadoStorage/ChadoAnalysisDefaultTest.php