Tripal
Functions
tripal_chado.module.DEPRECATED.api.inc File Reference

Functions

 tripal_get_analysis ($identifier, $options)
 
 tripal_get_analysis_select_options ($syncd_only=TRUE)
 
 tripal_insert_contact ($values)
 
 tripal_autocomplete_contact ($text)
 
 tripal_get_cv ($identifiers, $options=[])
 
 tripal_get_cv_select_options ()
 
 tripal_get_cvterm ($identifiers, $options=[])
 
 tripal_get_cvterm_select_options ($cv_id, $rel_type=FALSE)
 
 tripal_update_cvtermpath ($cv_id, $job_id=NULL)
 
 tripal_insert_cv ($name, $definition)
 
 tripal_insert_cvterm ($term, $options=[])
 
 tripal_submit_obo_job ($obo)
 
 tripal_insert_obo ($name, $path)
 
 tripal_get_obo ($values)
 
 tripal_autocomplete_cv ($string='')
 
 tripal_autocomplete_cvterm ($cv_id, $string='')
 
 tripal_associate_cvterm ($basetable, $record_id, $cvterm, $options=[])
 
 tripal_get_db ($identifiers, $options=[])
 
 tripal_get_db_select_options ()
 
 tripal_get_dbxref ($identifiers, $options=[])
 
 tripal_get_dbxref_url ($dbxref)
 
 tripal_insert_db ($values, $options=[])
 
 tripal_insert_dbxref ($values)
 
 tripal_associate_dbxref ($basetable, $record_id, $dbxref, $options=[])
 
 tripal_autocomplete_dbxref ($db_id, $string='')
 
 tripal_autocomplete_feature ($string='')
 
 tripal_reverse_compliment_sequence ($sequence)
 
 tripal_get_feature_sequences ($feature, $options)
 
 tripal_get_bulk_feature_sequences ($options)
 
 tripal_get_fasta_defline ($feature, $notes='', $featureloc=NULL, $type='', $length=0)
 
 tripal_get_location_string ($featureloc)
 
 tripal_get_organism ($identifiers, $options=[])
 
 tripal_get_organism_scientific_name ($organism)
 
 tripal_get_organism_select_options ($syncd_only=TRUE)
 
 tripal_get_organism_image_url ($organism)
 
 tripal_autocomplete_organism ($text)
 
 tripal_abbreviate_infraspecific_rank ($rank)
 
 tripal_validate_phylotree ($val_type, &$options, &$errors, &$warnings)
 
 tripal_insert_phylotree (&$options, &$errors, &$warnings)
 
 tripal_update_phylotree ($phylotree_id, &$options)
 
 tripal_delete_phylotree ($phylotree_id)
 
 tripal_assign_phylogeny_tree_indices (&$tree, &$index=1)
 
 tripal_phylogeny_import_tree (&$tree, $phylotree, $options, $vocab=[], $parent=NULL)
 
 tripal_phylogeny_get_node_types_vocab ()
 
 tripal_phylogeny_import_tree_file ($file_name, $format, $options=[], $job_id=NULL)
 
 tripal_get_publication ($identifiers, $options=[])
 
 tripal_publication_exists ($pub_details)
 
 tripal_autocomplete_pub ($string='')
 
 tripal_import_pub_by_dbxref ($pub_dbxref, $do_contact=FALSE, $do_update=TRUE)
 
 tripal_execute_active_pub_importers ($report_email=FALSE, $do_update=FALSE)
 
 tripal_reimport_publications ($do_contact=FALSE, $dbxref=NULL, $db=NULL)
 
 tripal_pub_create_citations ($options)
 
 tripal_pub_create_citation ($pub)
 
 tripal_get_minimal_pub_info ($pub)
 
 tripal_get_stock ($identifiers, $options=[])
 
 tripal_get_multiple_stocks ($identifiers, $options=[])
 

Detailed Description

These api functions are deprecated, if your site is currently using them please update your code with the newer tripal_chado functions.