|
| | tripal_get_analysis ($identifier, $options) |
| |
| | tripal_get_analysis_select_options ($syncd_only=TRUE) |
| |
| | tripal_insert_contact ($values) |
| |
| | tripal_autocomplete_contact ($text) |
| |
| | tripal_get_cv ($identifiers, $options=[]) |
| |
| | tripal_get_cv_select_options () |
| |
| | tripal_get_cvterm ($identifiers, $options=[]) |
| |
| | tripal_get_cvterm_select_options ($cv_id, $rel_type=FALSE) |
| |
| | tripal_update_cvtermpath ($cv_id, $job_id=NULL) |
| |
| | tripal_insert_cv ($name, $definition) |
| |
| | tripal_insert_cvterm ($term, $options=[]) |
| |
| | tripal_submit_obo_job ($obo) |
| |
| | tripal_insert_obo ($name, $path) |
| |
| | tripal_get_obo ($values) |
| |
| | tripal_autocomplete_cv ($string='') |
| |
| | tripal_autocomplete_cvterm ($cv_id, $string='') |
| |
| | tripal_associate_cvterm ($basetable, $record_id, $cvterm, $options=[]) |
| |
| | tripal_get_db ($identifiers, $options=[]) |
| |
| | tripal_get_db_select_options () |
| |
| | tripal_get_dbxref ($identifiers, $options=[]) |
| |
| | tripal_get_dbxref_url ($dbxref) |
| |
| | tripal_insert_db ($values, $options=[]) |
| |
| | tripal_insert_dbxref ($values) |
| |
| | tripal_associate_dbxref ($basetable, $record_id, $dbxref, $options=[]) |
| |
| | tripal_autocomplete_dbxref ($db_id, $string='') |
| |
| | tripal_autocomplete_feature ($string='') |
| |
| | tripal_reverse_compliment_sequence ($sequence) |
| |
| | tripal_get_feature_sequences ($feature, $options) |
| |
| | tripal_get_bulk_feature_sequences ($options) |
| |
| | tripal_get_fasta_defline ($feature, $notes='', $featureloc=NULL, $type='', $length=0) |
| |
| | tripal_get_location_string ($featureloc) |
| |
| | tripal_get_organism ($identifiers, $options=[]) |
| |
| | tripal_get_organism_scientific_name ($organism) |
| |
| | tripal_get_organism_select_options ($syncd_only=TRUE) |
| |
| | tripal_get_organism_image_url ($organism) |
| |
| | tripal_autocomplete_organism ($text) |
| |
| | tripal_abbreviate_infraspecific_rank ($rank) |
| |
| | tripal_validate_phylotree ($val_type, &$options, &$errors, &$warnings) |
| |
| | tripal_insert_phylotree (&$options, &$errors, &$warnings) |
| |
| | tripal_update_phylotree ($phylotree_id, &$options) |
| |
| | tripal_delete_phylotree ($phylotree_id) |
| |
| | tripal_assign_phylogeny_tree_indices (&$tree, &$index=1) |
| |
| | tripal_phylogeny_import_tree (&$tree, $phylotree, $options, $vocab=[], $parent=NULL) |
| |
| | tripal_phylogeny_get_node_types_vocab () |
| |
| | tripal_phylogeny_import_tree_file ($file_name, $format, $options=[], $job_id=NULL) |
| |
| | tripal_get_publication ($identifiers, $options=[]) |
| |
| | tripal_publication_exists ($pub_details) |
| |
| | tripal_autocomplete_pub ($string='') |
| |
| | tripal_import_pub_by_dbxref ($pub_dbxref, $do_contact=FALSE, $do_update=TRUE) |
| |
| | tripal_execute_active_pub_importers ($report_email=FALSE, $do_update=FALSE) |
| |
| | tripal_reimport_publications ($do_contact=FALSE, $dbxref=NULL, $db=NULL) |
| |
| | tripal_pub_create_citations ($options) |
| |
| | tripal_pub_create_citation ($pub) |
| |
| | tripal_get_minimal_pub_info ($pub) |
| |
| | tripal_get_stock ($identifiers, $options=[]) |
| |
| | tripal_get_multiple_stocks ($identifiers, $options=[]) |
| |
These api functions are deprecated, if your site is currently using them please update your code with the newer tripal_chado functions.
